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What is a protonation?

What is a protonation? Here are some definitions.

Noun
  1. (chemistry) the addition of a proton (hydrogen ion) to an atom, molecule or ion, normally to generate a cation
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Examples
These reactions, some of which are run on a large scale in the petroleum industry, are initiated by the protonation of saturated hydrocarbons.
The protonation of amino acid side chains was supposed to cause the reorganization of the native state into the so-called A-state.
Very few porphyrins are known to form J-aggregates, the main requisite being the zwitterionic character with the protonation of the pyrrole nitrogen in the macrocycle.
Protic eutectic ILs that is a protic eutectic mixture of hydrochloride salts and complexing agents produced via protonation and complexation.
Here, internal protonation processes between the chromophoric group and the proton binding site close to the chromophoric group were assumed.
This reaction is initiated by the electrophilic protonation of isobutylene.

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